In Preparation / Submitted
Ozmen V., Çağlayan A.O., Ordu C., Erdoğan Z., Aktepe F., Özmen T., İlgün A.S., Öztürk A., Soybir G., Alco G., Pilancı K.N., Elbüken F., Agacayak F., Tapan T.K., Tsaousis G.N., Papadopoulou E., Agiannitopoulos K., Pepe G., Kampouri S., Nasioulas G., Soran A., (2021) Hereditary cancer genes in breast cancer (BC) patients in Turkey: Importance of consanguineous marriage (CM) and family history (FH). [submitted]
Published / In press
2022
Tsaousis G.N., Papadopoulou, E., Agiannitopoulos, K., Pepe, G., Tsoulos, N., Boukovinas, I., Floros, T., Iosifidou, R., Katopodi, O., Koumarianou, A., Markopoulos, C., Papazisis, K., Venizelos, V., Kapsimalis, A., Xepapadakis, G., Psyrri, A., Banu, E., Eniu, D.T., Blidaru, A., Stanculeanu, D.L., Ungureanu, A., Ozmen, V., Tansan, S., Tekinel, M., Yalcin, S., Nasioulas, G. (2021) Revisiting the Implications of Positive Germline Testing Results Using Multi-gene Panels in Breast Cancer Patients. Cancer Genomics Proteomics. Jan-Feb 2022;19(1):60-78. doi: 10.21873/cgp.20304 [PubMed] [Google Scholar]
2021
Özdoğan, M., E. Papadopoulou, N. Tsoulos, A. Tsantikidi, V.-M. Mariatou, G. Tsaousis, E. Kapeni, E. Bourkoula, D. Fotiou, G. Kapetsis, I. Boukovinas, N. Touroutoglou, A. Fassas, A. Adamidis, P. Kosmidis, D. Trafalis, E. Galani, G. Lypas, B. Orhan, S. Tansan, T. Özatlı, O. Kırca, O. Çakır and G. Nasioulas (2021). Comprehensive tumor molecular profile analysis in clinical practice. BMC Medical Genomics 14(1): 105. [PubMed] [Google Scholar]
K Agiannitopoulos, G Pepe, E Papadopoulou, Tsaousis G.N., S Kampouri, S Maravelaki, A Fassas, C Christodoulou, R Iosifidou, S Karageorgopoulou, C Markopoulos, I Natsiopoulos, K Papazisis, M Vasilaki-Antonatou, V Venizelos, V Ozmen, S Tansan, K Kaban, DanTudor Eniu, A Chiorean, G Nasioulas (2021) Clinical Utility of Functional RNA Analysis for the Reclassification of Splicing Gene Variants in Hereditary Cancer. Cancer Genomics Proteomics;18(3):285-294. doi: 10.21873/cgp.20259. [PubMed] [Google Scholar]
Kontou P.I., Pavlopoulou A., Dimou N.L., Theodoropoulou M.C., Braliou G., Tsaousis G.N., Pavlopoulos G.A., Hamodrakas S.J., Bagos P.G. (2021) The human GPCR signal transduction network. Network Modeling Analysis in Health Informatics and Bioinformatics 10, Article number: 3 (2021) [PubMed] [Google Scholar]
Agiannitopoulos K., Samara P., Papadopoulou M., Efthymiadoy A., Papadopoulou E., Tsaousis G.N.,Mertzanos M., Babalis D., Lamnissou K. miRNA polymorphisms and risk of premature coronary artery disease. (2021) Hellenic J Cardiol. 2021 Jul-Aug;62(4):278-284. doi: 10.1016/j.hjc.2020.01.005. [PubMed] [Google Scholar]
2020
Agiannitopoulos K., Papadopoulou E., Tsaousis G.N., Pepe G, Kambouri S, Lypas G. Nasioulas G. (2020) Report of a germline double heterozygote in MSH2 and PALB2 . Molecular Genetics & Genomic Medicine DOI: 10.1002/mgg3.1242 [PubMed] [Google Scholar]
Nastou K.C., Tsaousis G.N., Iconomidou V.A. (2020) PerMemDB: a database for eukaryotic peripheral membrane proteins. BBA - Biomembranes 1862:183076 doi: 10.1016/j.bbamem.2019.183076 [PubMed] [Google Scholar] [bioRxiv]
Gourgouli K., Gourgouli I., Tsaousis G.N., Spai S., Niskopoulou M., Efthimiopoulos S., Lamnissou K. (2020) Investigation of genetic base in the treatment of age-related macular degeneration. Int Ophthalmol. Apr;40(4):985-997. doi: 10.1007/s10792-019-01274-7 [PubMed] [Google Scholar]
2019
Papadopoulou E., Tsoulos N., Tsantikidi K., Mariatou-Metaxa V., Stamou P.E., Kladi-Skandali A., Kapeni E., Tsaousis G., Pentheroudakis G., Petrakis D., Lampropoulou D.I., Aravantinos G., Varthalitis I., Kesisis G., Boukovinas I., Papakotoulas P., KatirClintzoglou N., Athanasiadis E., Stavridi F., Christodoulou C., Koumarianou A., Eralp Y., Nasioulas G. Clinical Feasibility of NGS liquid biopsy analysis in NSCLC patients. PLoS One. 2019 Dec 20;14(12):e0226853. doi: 10.1371/journal.pone.0226853. [PubMed] [Google Scholar]
Agiannitopoulos K., Papadopoulou E., Tsaousis G.N., Pepe G, Kambouri S, Kocdor M.A., Nasioulas G. (2019) Characterization of the c.793-1G>A splicing variant in CHEK2 gene as pathogenic: a case report BMC Medical Genetics 20, Article number: 131 [PubMed] [Google Scholar]
Tsaousis G.N., Papadopoulou E, Apessos A, Agiannitopoulos K, Pepe G, Kambouri S, Diamantopoulos N, Floros T, Iosifidou R, Katopodi O, Koumarianou A, Markopoulos C, Papazisis K, Venizelos V, Xanthakis I, Xepapadakis G, Banu E, Eniu DT, Negru S, Stanculeanu DL, Ungureanu A, Ozmen V, Tansan S, Tekinel M, Yalcin S, Nasioulas G. (2019) Analysis of hereditary cancer syndromes by using a panel of genes: Novel and multiple pathogenic mutations. BMC Cancer. 2019 Jun 3;19(1):535. [PubMed] [Google Scholar]
Tamposis IA, Tsirigos KD, Theodoropoulou MC, Kontou PI, Tsaousis G.N., Sarantopoulou D, Litou ZI, Bagos PG. (2019) JUCHMME: A Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis.Bioinformatics. Jun 28. pii: btz533.[PubMed] [Google Scholar]
2018
Apessos Α., Agiannitopoulos Κ., Pepe G., Tsaousis G.N., Papadopoulou E., Mariatou-Metaxa V., Tsirigoti A., Efstathiadou C., Markopoulos C., Xepapadakis G., Venizelos V., Tsiftsoglou A., Natsiopoulos I., Nasioulas G. (2018) Comprehensive BRCA mutation analysis in the Greek population. Experience from a single clinical diagnostic center. Cancer Genet. 220 1–12 doi:10.1016/j.cancergen.2017.10.002 [PubMed] [Google Scholar]
2017
Tsoulos N., Papadopoulou E., Metaxa-Mariatou V., Tsaousis G.N., Efstathiadou C., Tounta G., Scapeti A., Bourkoula E., Zarogoulidis P., Pentheroudakis G., Kakolyris S., Boukovinas I., Papakotoulas P., Athanasiadis E., Floros T., Koumarianou A., Barbounis V., Dinischiotu A., Nasioulas G. (2017) Tumor molecular profiling of NSCLC patients using Next Generation Sequencing. Oncol Rep. 38(6):3419-3429. doi: 10.3892/or.2017.6051 [PubMed] [Google Scholar]
Tsaousis G.N, Hamodrakas S.J., Bagos P.G. (2017) Predicting beta barrel transmembrane proteins using HMMs.In: Westhead, D.R., Vijayabaskar, M.S. (Eds.) Hidden Markov Models: Methods and Protocols, Methods in Molecular Biology [In press] [PubMed] [Google Scholar] [Book]
Tsaousis G.N., Theodoropoulou M.C., Hamodrakas S.J., Bagos P.G. (2017) Predicting alpha helical transmembrane proteins using HMMs. In: Westhead, D.R., Vijayabaskar, M.S. (Eds.) Hidden Markov Models: Methods and Protocols, Methods in Molecular Biology [In press] [PubMed] [Google Scholar] [Book]
2016
Papadopoulou E., Metaxa-Mariatou V., Tsaousis G.N., Tsoulos N., Tsirigoti A., Efstathiadou C., Apessos A., Agiannitopoulos K., Pepe G., Bourkoula E., Nasioulas G. (2016) Molecular predictive markers in tumors of the gastrointestinal tract. World J Gastrointest Oncol. 8(11): 772-785 doi: 10.4251/wjgo.v8.i11.772. [PubMed] [Google Scholar]
Nastou K.C., Tsaousis G.N., Papandreou N.C., Hamodrakas S.J. (2016) MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models. Biochim Biophys Acta. 1864(7): 747-754 doi: 10.1016/j.bbapap.2016.03.015 [bioRxiv] [PubMed] [Google Scholar]
2015
Ntostis P., Agiannitopoulos K., TTsaousis G.N., Pantos K., Lamnissou K., (2015) Evidence for association of the rs605059 polymorphism of HSD17B1 gene with recurrent spontaneous abortions. J Matern Fetal Neonatal Med. 2015;28(18):2250-3 doi: 10.3109/14767058.2014.984289. [PubMed] [Google Scholar]
2014
Nastou K.C., Tsaousis G.N., Kremizas K.E., Litou Z.I., Hamodrakas S.J. (2014) The human plasma membrane peripherome: visualization and analysis. BioMed Research International, vol. 2014, Article ID 397145, 12 pages, doi:10.1155/2014/397145. [arXiv] [PubMed] [Google Scholar]
Tsaousis G.N., Bagos, P.G. Hamodrakas, S.J. (2014) HMMpTM: Improving transmembrane protein topology prediction using phosphorylation and glycosylation site prediction. Biochim Biophys Acta. 1844(2): 316-322. [PubMed] [Google Scholar]
2013
Gypas, F., Tsaousis G.N., Hamodrakas, S.J. (2013) mpMoRFsDB: A database of molecular recognition features (MoRFs) in membrane proteins. Bioinformatics 29(19):2517-8 doi:10.1093/bioinformatics/btt427. [PubMed] [Google Scholar]
Kotta-Loizou, I., Tsaousis G.N.,, Hamodrakas, S.J. (2013) Analysis of Molecular Recognition Features (MoRFs) in membrane proteins. Biochim Biophys Acta., 15;1834(4): 798-807. [PubMed] [Google Scholar]
2010
Tsaousis G.N., Tsirigos K.D., Andrianou, X.D., Liakopoulos, T.D., Bagos P.G., Hamodrakas S.J. (2010) ExTopoDB: A database of experimentally derived topological models of transmembrane proteins. Bioinformatics 26(19): 2490–2492. [PubMed] [Google Scholar]
2009
Bagos, P.G., Tsaousis G.N., and Hamodrakas, S.J. (2009) How many 3D structures do we need to train a predictor? Genomics Proteomics Bioinformatics, 2009 7(3): 128-137. [PubMed] [Google Scholar]